Please refer this example.
Here I have used Ajax AnimationExtender to show the Modal Popup from Left top to the center.
What you can do is set the horizontal position as 0 and vertical as some 400 points.
Ref: Building Modal Popup using ASP.Net AJAX ModalPopupExtender Control
HTML
<%@ Register Assembly="AjaxControlToolkit" Namespace="AjaxControlToolkit" TagPrefix="cc1" %>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head runat="server">
    <title></title>
    <style type="text/css">
        .modalBackground
        {
            background-color: Black;
            filter: alpha(opacity=90);
            opacity: 0.8;
        }
        .modalPopup
        {
            background-color: #FFFFFF;
            border-width: 3px;
            border-style: solid;
            border-color: black;
            padding-top: 10px;
            padding-left: 10px;
            width: 300px;
            height: 140px;
        }
    </style>
</head>
<body style="height: 3000px">
    <form id="form1" runat="server">
    <asp:ScriptManager ID="ScriptManager1" runat="server">
    </asp:ScriptManager>
    <asp:Button ID="btnShow" runat="server" Text="Show Modal Popup" />
    <!-- ModalPopupExtender -->
    <cc1:ModalPopupExtender ID="mp1" runat="server" PopupControlID="Panel1" TargetControlID="btnShow"
        CancelControlID="btnClose" BackgroundCssClass="modalBackground">
    </cc1:ModalPopupExtender>
    <asp:Panel ID="Panel1" runat="server" CssClass="modalPopup" align="center" Style="display: none">
        This is an ASP.Net AJAX ModalPopupExtender Example<br />
        <asp:Button ID="btnClose" runat="server" Text="Close" />
    </asp:Panel>
    <!-- ModalPopupExtender -->
    <cc1:AnimationExtender ID="popupAnimation" runat="server" TargetControlID="btnShow">
        <Animations>
                <OnClick>
                    <Parallel AnimationTarget="Panel1"  
                    Duration="0.3" Fps="25">
                    <FadeIn />                                         
                    <Move Horizontal="500" Vertical="250"></Move>
                    </Parallel>                    
                </OnClick>
        </Animations>
    </cc1:AnimationExtender>
    </form>
</body>
</html>
Screenshot
